Cream Cheese Stuffed Everything Bagel Bites

Introduction

There’s something undeniably comforting about a warm bagel in the morning — but what if you could skip the wait, the water bath, and the yeast, and still get all that delicious, chewy satisfaction? These Cream Cheese Stuffed Everything Bagel Bites are your new breakfast best friend. Made with a no-boil, no-yeast dough that comes together with just four simple ingredients — Greek yogurt, flour, baking powder, and salt — these mini bagel bites are stuffed with creamy, tangy cream cheese and topped with that classic everything bagel seasoning we all love.

They bake up golden brown, smell like heaven coming out of the oven, and make for the coziest way to start your day or snack anytime. I whipped up a batch last weekend when I had a few friends over, and they were gone before the coffee had even finished brewing.

Why You’ll Love This Recipe

Key Benefits

• Quick and easy: No rise time, no waiting around. You’ll have hot, fresh bagel bites in under 1 hour.
• Minimal ingredients: Pantry staples and fridge basics — nothing fancy required.
• Beginner-friendly: No yeast, no boiling, and no special equipment.
• Family-approved: Kids and adults alike will love the soft, cheesy center and savory topping.
• Make-ahead potential: Perfect for meal prep or party planning.

Taste & Texture

Each bite delivers that classic chewy bagel texture with a golden crust. Inside, a melty pocket of cream cheese adds richness and contrast. And on top, the crunchy, savory mix of garlic, onion, sesame, and poppy seeds brings that beloved everything bagel flavor in full force. It’s like your favorite bagel shop treat — but bite-sized and homemade.

Dietary Attributes

• Vegetarian-friendly
• High in protein from Greek yogurt and cream cheese
• Nut-free, making it great for school snacks or brunch gatherings

Ingredients & Substitutions

Ingredient List

• 1 cup plain Greek yogurt
• 1 cup all-purpose flour
• 2 tsp baking powder
• 1/2 tsp salt
• 5 tbsp cream cheese (about 2 tsp per bagel bite)
• 1 egg, beaten (for egg wash)
• Everything bagel seasoning (to taste)

Notes on Quality

Use full-fat Greek yogurt for the best dough consistency — it adds richness and better structure. For the cream cheese, a classic brick-style works best because it’s firm enough to hold its shape while baking. Store-bought everything bagel seasoning is perfectly fine here, but if you’re feeling DIY, you can mix up your own with sesame seeds, poppy seeds, dried onion, garlic flakes, and sea salt.

Possible Substitutions

• Swap the Greek yogurt for dairy-free yogurt if needed, but make sure it’s thick.
• Use whole wheat flour or a gluten-free flour blend for dietary needs.
• Swap cream cheese for a dairy-free alternative or even a savory spread like herbed goat cheese.

Step-by-Step Instructions

• Preheat your oven to 375°F.
• In a large bowl, whisk together flour, baking powder, and salt.

• Add Greek yogurt to the dry ingredients and mix with a spatula until a shaggy dough forms.
• Transfer the dough to a lightly floured surface and knead for 1–2 minutes until smooth.
• Divide the dough into 8 equal pieces (start by halving the dough, then cutting each half into quarters).
• Flatten each piece into a small circle, then place them on a parchment-lined, greased baking sheet.
• Add about 2 teaspoons of cream cheese to the center of each dough circle.
• Gently fold the edges of the dough over the cream cheese and pinch to seal, forming a ball. Place the seam-side down on the baking sheet.
• Brush the tops with beaten egg and generously sprinkle everything bagel seasoning over each one.
• Bake for 25–27 minutes or until golden brown.
• Let cool slightly, then serve warm and enjoy the melty, bagel goodness.

Expert Tips & Tricks

Best Practices

• Lightly flour your hands and work surface to keep the dough from sticking.
• Seal the dough well around the cream cheese so it doesn’t leak during baking.
• Use a cookie scoop to portion out the cream cheese evenly if you want to be precise.

Common Mistakes

• Don’t over-knead the dough; just 1–2 minutes is enough to bring it together.
• Avoid overstuffing with cream cheese — too much filling can cause leaks.
• Be sure your oven is fully preheated to ensure the bagel bites bake evenly.

Time-Saving Tips

• Mix the dry ingredients ahead and store in a jar for an instant start next time.
• Pre-portion cream cheese and freeze — it helps when stuffing the bites.
• Double the batch and freeze unbaked bites for a future breakfast or snack.

Serving Suggestions

Pairings

• Serve with scrambled eggs and fruit for a full breakfast plate.
• Add them to a brunch board with mini muffins, fresh berries, and jam.
• Pair with a side salad or soup for a satisfying lunch.

Presentation Ideas

• Arrange on a wooden board or ceramic platter for a rustic brunch look.
• Garnish with fresh parsley or dill for a pop of color.
• Serve in a linen-lined basket for a cozy feel.

Beverage Pairings

• Hot coffee or chai latte
• Fresh orange juice or a green smoothie
• For a fun brunch, serve with a mimosa or Bloody Mary

Storage & Reheating

Leftover Storage

Store any leftovers in an airtight container in the fridge for up to 3 days. For longer storage, freeze in a single layer on a baking sheet, then transfer to a freezer-safe bag for up to 2 months.

Reheating Methods

• Oven: Reheat at 350°F for 8–10 minutes until warmed through.
• Air fryer: 5–6 minutes at 350°F for a crispier exterior.
• Microwave: 20–30 seconds, though this may soften the crust.

Frequently Asked Questions

Substitutions & Adjustments

Can I use self-rising flour?
Yes! Just skip the baking powder and salt if you use self-rising flour.

Can I make these with flavored cream cheese?
Absolutely — herb, veggie, or even jalapeño cream cheese work beautifully.

Can I make mini versions for appetizers?
Sure! Just divide the dough into 12–16 smaller portions and reduce the baking time by a few minutes.

Troubleshooting

Why is my dough sticky?
Greek yogurt brands vary — if your dough is too sticky, add a little more flour, one tablespoon at a time.

My bagel bites exploded in the oven. What happened?
The dough might not have been sealed completely, or they may have been overfilled. Be sure to pinch the seams tight.

Variations & Customizations

Dietary Adaptations

• Use dairy-free yogurt and cream cheese for a vegan version.
• Try a gluten-free flour blend and adjust texture as needed with extra yogurt.

Flavor Twists

• Add shredded cheddar to the dough for cheesy bagel bites.
• Stir chives or herbs into the cream cheese filling for added flavor.
• Top with sesame seeds or poppy seeds alone for a more minimalist version.

Seasonal/Holiday Versions

• Add a bit of cinnamon sugar topping for a sweet-savory fall spin.
• Make heart-shaped versions for Valentine’s Day (so cute for brunch!).
• Serve with cranberry cream cheese around the holidays for a festive touch.

And speaking of seasonal favorites, if you’re in the mood for more fun, festive recipes, be sure to check out some of my go-to treats:

• Cupid Cupcakes – A Valentine’s Day Favorite
• Vegan Cherry Almond Brownies
• Red Velvet Sugar Cookies

Conclusion

If you love everything bagels and crave that perfect mix of chewy bread and creamy filling, these Cream Cheese Stuffed Everything Bagel Bites are a must-try. They’re fun to make, insanely satisfying, and always a crowd-pleaser. Plus, with their simple dough and endless flavor options, they’re bound to become your new breakfast or snack staple.

Let me know in the comments if you make these — I love seeing your creations! And don’t forget to pin this recipe and follow along for more easy, cozy kitchen inspiration over on Pinterest: @recipescookingwithcallie

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